Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy
Data availability This study used publicly available SRT datasets. 10x Genomics Xenium datasets were downloaded from https://www.10xgenomics.com/datasets/fresh-frozen-mouse-brain-replicates-1-standard and https://www.10xgenomics.com/datasets/xenium-prime-ffpe-neonatal-mouse. Vizgen MERSCOPE datasets were downloaded from https://info.vizgen.com/mouse-brain-map and https://info.vizgen.com/mouse-liver-data. The MERFISH hypothalamus dataset was downloaded; metadata is available from the original publication at ref. 29 , segmented cells are available via…
bubmagFebruary 10, 2026